JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OLR1_chr12_10153301_10177132	0/0	t0022	1639	1	0	1	0	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0023	1639	1	1	0	0	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0024	1633	1	1	0	0	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0025	1645	1	1	0	0	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0026	1643	1	1	0	0	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0027	1641	1	0	0	0	0	1	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0028	1639	1	0	0	1	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0029	1634	1	0	0	1	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0030	1634	1	0	0	1	0	0	copy fasta	OLR1	chr12	10153301	10177132
OMA1_chr1_58475719_58551726	0/1	t0001	287	306	57	63	140	11	34	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	t0002	288	51	17	9	12	5	8	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	1/0	t0003	287	15	12	2	0	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	t0004	287	6	0	0	6	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	t0005	287	4	3	1	0	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	t0006	287	1	0	1	0	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	t0007	287	1	1	0	0	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMD_chr9_92407380_92429471	1/0	t0001	3059	197	35	32	110	4	15	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/1	t0002	3058	97	2	24	54	6	10	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0003	3060	84	48	13	13	5	5	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0004	3060	12	1	4	3	1	3	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0005	3061	11	5	1	4	0	1	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0006	3059	3	0	0	3	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0007	3060	3	0	0	3	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0008	3060	3	0	0	3	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0009	3059	2	0	0	2	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0010	3058	1	0	0	1	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0011	3060	1	1	0	0	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0012	3060	1	0	1	0	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0013	3059	1	0	0	0	0	1	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0014	3058	1	0	0	0	0	1	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0015	3059	1	0	1	0	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0016	3058	1	0	0	1	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0017	3059	1	0	0	1	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0018	3059	1	1	0	0	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0019	3060	1	1	0	0	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0020	3060	1	1	0	0	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0021	3060	1	1	0	0	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0022	3059	1	1	0	0	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0023	3059	1	0	0	1	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0024	3058	1	0	0	1	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	t0025	3059	1	1	0	0	0	0	copy fasta	OMD	chr9	92407380	92429471
OMG_chr17_31289647_31302239	1/1	t0001	453	361	88	60	167	12	32	copy fasta	OMG	chr17	31289647	31302239
OMG_chr17_31289647_31302239	0/0	t0002	453	2	2	0	0	0	0	copy fasta	OMG	chr17	31289647	31302239
OMG_chr17_31289647_31302239	0/0	t0003	453	1	0	0	1	0	0	copy fasta	OMG	chr17	31289647	31302239
ONECUT1_chr15_52750053_52795336	0/0	t0001	2955	149	10	22	84	6	27	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0002	2953	70	3	13	43	3	8	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	1/0	t0003	2955	30	4	17	0	6	2	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0004	2956	15	1	0	13	1	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/1	t0005	2954	11	7	1	2	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0006	2955	10	0	4	6	0	0	copy fasta	ONECUT1	chr15	52750053	52795336