JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ONECUT1_chr15_52750053_52795336	0/0	t0007	2953	9	9	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0008	2953	8	2	0	6	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0009	2953	6	5	1	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0010	2953	6	6	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0011	2954	6	4	0	2	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0012	2956	5	5	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0013	2953	5	2	3	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0014	2949	5	2	2	0	0	1	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0015	2953	4	4	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0016	2957	3	0	0	3	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0017	2959	3	0	0	0	2	1	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0018	2954	3	3	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0019	2953	3	3	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0020	2953	3	3	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0021	2953	3	2	0	1	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0022	2953	3	3	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0023	2954	3	3	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0024	2956	2	2	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0025	2955	2	0	0	2	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0026	2955	2	2	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0027	2955	2	0	2	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0028	2955	2	0	2	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0029	2953	2	0	0	2	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0030	2953	2	1	1	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0031	2954	2	1	1	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0032	2949	2	0	1	1	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0033	2949	2	0	1	0	0	1	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0034	2955	1	0	0	1	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0035	2955	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0036	2955	1	0	0	1	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0037	2955	1	0	0	0	0	1	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0038	2955	1	0	0	1	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0039	2955	1	0	0	0	0	1	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0040	2955	1	0	0	0	0	1	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0041	2955	1	0	0	1	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0042	2955	1	0	0	1	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0043	2955	1	0	0	0	0	1	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0044	2955	1	0	1	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0045	2959	1	0	0	1	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0046	2955	1	0	0	1	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0047	2955	1	0	0	1	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0048	2953	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0049	2953	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0050	2953	1	0	1	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0051	2953	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0052	2953	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0053	2954	1	0	0	1	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0054	2953	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0055	2953	1	0	1	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0056	2953	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336