JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ONECUT1_chr15_52750053_52795336	0/0	t0057	2956	1	0	0	1	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0058	2953	1	0	0	1	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0059	2953	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0060	2949	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0061	2953	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	t0062	2953	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT2_chr18_57430374_57496298	0/0	t0001	14939	91	1	12	56	3	19	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0002	14936	36	0	5	31	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0003	14940	22	3	7	9	0	3	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0004	14932	20	10	0	4	0	6	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0005	14936	12	0	5	7	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0006	14932	9	9	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0007	14939	8	1	7	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0008	14932	6	0	0	6	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0009	14936	6	0	1	5	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0010	14927	6	4	2	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0011	14932	5	4	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0012	14939	5	0	0	5	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0013	14932	5	1	4	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0014	14924	4	4	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0015	14938	4	4	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0016	14937	4	0	0	4	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0017	14938	4	0	0	4	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0018	14932	4	0	0	4	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0019	14932	4	2	0	0	0	2	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0020	14938	4	0	1	2	0	1	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0021	14933	3	2	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0022	14923	3	3	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0023	14939	3	0	0	3	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0024	14939	3	0	0	0	1	2	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0025	14939	3	0	0	2	0	1	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0026	14936	3	1	0	2	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0027	14939	2	0	0	1	1	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0028	14936	2	0	0	2	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0029	14932	2	2	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0030	14924	2	2	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0031	14933	2	2	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0032	14939	2	2	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0033	14939	2	0	0	2	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0034	14938	2	1	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0035	14939	2	2	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0036	14937	2	0	0	1	0	1	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0037	14939	2	0	0	0	2	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0038	14933	2	2	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0039	14926	2	2	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0040	14940	2	0	0	0	2	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0041	14932	2	0	2	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0042	14938	2	0	0	1	0	1	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0043	14932	2	0	0	2	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0044	14936	2	0	0	2	0	0	copy fasta	ONECUT2	chr18	57430374	57496298