JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ONECUT2_chr18_57430374_57496298	0/0	t0045	14936	2	0	0	2	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0046	14932	2	2	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0047	14931	2	2	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0048	14924	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0049	14939	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0050	14931	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0051	14938	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0052	14936	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0053	14938	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0054	14932	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0055	14938	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0056	14935	1	0	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0057	14939	1	0	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0058	14936	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0059	14940	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0060	14941	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0061	14928	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0062	14933	1	0	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0063	14932	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0064	14931	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0065	14930	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	1/0	t0066	14919	1	0	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0067	14930	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0068	14925	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0069	14923	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0070	14929	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0071	14932	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0072	14939	1	0	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0073	14939	1	0	0	0	0	1	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0074	14941	1	0	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0075	14940	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0076	14939	1	0	0	0	0	1	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0077	14939	1	0	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0078	14939	1	0	0	0	0	1	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0079	14939	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0080	14939	1	0	0	0	0	1	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0081	14939	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0082	14939	1	0	0	0	0	1	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0083	14939	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0084	14938	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0085	14929	1	0	0	0	1	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0086	14939	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0087	14940	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0088	14937	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0089	14933	1	0	0	0	1	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0090	14939	1	0	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0091	14939	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0092	14939	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0093	14940	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0094	14940	1	0	0	0	0	1	copy fasta	ONECUT2	chr18	57430374	57496298