JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ONECUT2_chr18_57430374_57496298	0/0	t0095	14939	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0096	14940	1	0	0	0	0	1	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0097	14936	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0098	14932	1	0	0	0	1	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0099	14932	1	0	0	0	0	1	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0100	14932	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0101	14932	1	0	0	0	0	1	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0102	14931	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0103	14938	1	0	0	0	0	1	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0104	14938	1	0	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0105	14936	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0106	14936	1	0	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0107	14932	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0108	14939	1	0	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/1	t0109	14932	1	0	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0110	14938	1	0	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0111	14937	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0112	14932	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0113	14938	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0114	14938	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0115	14932	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0116	14936	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0117	14936	1	0	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0118	14936	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0119	14936	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0120	14936	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0121	14932	1	0	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0122	14938	1	0	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0123	14938	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0124	14932	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0125	14927	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0126	14932	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0127	14932	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	t0128	14925	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT3_chr19_1748506_1785988	0/0	t0001	5700	9	2	2	5	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0002	5700	8	0	1	7	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0003	5691	6	2	3	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0004	5691	5	0	0	4	0	1	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0005	5690	4	0	2	2	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0006	5701	4	0	1	3	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0007	5690	4	0	0	4	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0008	5685	3	0	0	3	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0009	5694	3	0	0	3	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0010	5690	3	0	0	3	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	1/0	t0011	5701	3	0	1	0	1	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0012	5701	3	3	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0013	5689	3	1	1	0	0	1	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0014	5700	2	0	0	2	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0015	5703	2	2	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0016	5703	2	2	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988