JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ONECUT3_chr19_1748506_1785988	0/0	t0017	5693	2	0	0	0	1	1	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0018	5689	2	1	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0019	5689	2	0	2	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0020	5699	2	0	0	0	0	2	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0021	5699	2	0	0	2	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0022	5694	2	0	1	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0023	5700	2	0	2	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0024	5700	2	0	0	2	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0025	5685	2	2	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0026	5689	2	0	0	2	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0027	5707	2	0	0	2	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0028	5703	2	0	2	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0029	5716	2	0	0	0	2	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0030	5706	2	0	2	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0031	5691	2	0	2	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0032	5691	2	0	0	0	0	2	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0033	5689	2	0	0	0	1	1	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0034	5705	2	0	0	2	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0035	5701	2	0	1	0	0	1	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0036	5705	2	0	0	2	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0037	5704	2	0	2	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0038	5700	2	1	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0039	5691	1	0	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0040	5694	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0041	5696	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0042	5692	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0043	5698	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0044	5700	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0045	5703	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0046	5707	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0047	5705	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0048	5703	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0049	5700	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0050	5697	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0051	5699	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0052	5713	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0053	5703	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0054	5703	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0055	5701	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0056	5690	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0057	5694	1	0	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0058	5695	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0059	5696	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0060	5699	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0061	5691	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0062	5693	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0063	5686	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0064	5692	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0065	5694	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0066	5691	1	0	0	0	0	1	copy fasta	ONECUT3	chr19	1748506	1785988