Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARSJ_chr4_113895284_113984647	0/0	t0037	2804	1	1	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0038	2804	1	1	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0039	2761	1	0	1	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0040	2800	1	0	1	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSK_chr5_95550101_95610102	1/0	t0001	1755	220	23	45	117	10	24	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/1	t0002	1755	103	46	10	33	3	10	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	t0003	1755	6	6	0	0	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	t0004	1755	3	1	1	0	1	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	t0005	1755	2	0	0	2	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	t0006	1755	1	1	0	0	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	t0007	1755	1	1	0	0	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSL_chrX_2929521_2969341	1/1	t0001	450	249	27	47	132	12	29	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	t0002	450	38	33	5	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	t0003	450	23	7	5	11	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	t0004	450	5	4	1	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	t0005	450	4	4	0	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	t0006	450	2	0	0	0	1	1	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	t0007	446	1	1	0	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	t0008	450	1	1	0	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	t0009	451	1	0	1	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	t0010	450	1	1	0	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	t0011	449	1	0	0	1	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	t0012	450	1	0	0	1	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	t0013	449	1	0	0	1	0	0	copy fasta	ARSL	chrX	2929521	2969341
ART1_chr11_3640128_3669416	1/1	t0001	332	340	66	55	168	14	35	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	t0002	332	43	19	5	17	0	2	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	t0003	332	5	0	3	0	2	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	t0004	332	3	3	0	0	0	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	t0005	332	1	0	1	0	0	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	t0006	332	1	0	0	1	0	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	t0007	332	1	0	0	0	0	1	copy fasta	ART1	chr11	3640128	3669416
ART3_chr4_76069709_76117786	0/0	t0001	388	194	52	27	93	5	17	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	1/1	t0002	388	107	29	24	26	10	16	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	0/0	t0003	385	79	4	12	55	1	7	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	0/0	t0004	388	5	4	1	0	0	0	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	0/0	t0005	388	4	4	0	0	0	0	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	0/0	t0006	385	2	0	0	2	0	0	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	0/0	t0007	385	1	1	0	0	0	0	copy fasta	ART3	chr4	76069709	76117786
ART4_chr12_14820569_14848526	0/0	t0001	4216	152	17	21	89	7	18	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0002	4217	71	31	7	23	2	8	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0003	4217	54	15	16	15	1	7	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0004	4218	27	4	12	5	2	4	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/1	t0005	4216	18	0	5	6	2	4	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	1/0	t0006	4216	10	9	0	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0007	4217	9	0	0	9	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0008	4218	7	2	0	0	2	3	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0009	4217	5	5	0	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0010	4217	3	0	3	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0011	4216	2	0	1	0	1	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0012	4216	2	2	0	0	0	0	copy fasta	ART4	chr12	14820569	14848526