JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ONECUT3_chr19_1748506_1785988	0/0	t0267	5711	1	0	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0268	5703	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0269	5702	1	0	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0270	5701	1	0	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0271	5703	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0272	5693	1	0	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0273	5705	1	0	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0274	5709	1	0	0	0	1	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0275	5706	1	0	0	0	1	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0276	5698	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0277	5690	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0278	5690	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0279	5691	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0280	5692	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0281	5705	1	0	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0282	5702	1	0	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0283	5704	1	0	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0284	5718	1	0	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0285	5714	1	0	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0286	5704	1	0	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0287	5689	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0288	5700	1	0	0	0	1	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0289	5704	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0290	5708	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0291	5704	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0292	5704	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0293	5713	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0294	5698	1	0	0	0	0	1	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0295	5689	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0296	5687	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0297	5691	1	0	0	0	0	1	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0298	5704	1	0	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0299	5689	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	t0300	5693	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
OOEP_chr6_73363555_73374897	1/1	t0001	335	427	87	80	198	16	44	copy fasta	OOEP	chr6	73363555	73374897
OOEP_chr6_73363555_73374897	0/0	t0002	335	1	1	0	0	0	0	copy fasta	OOEP	chr6	73363555	73374897
OOSP1_chr11_59933432_59962480	1/1	t0001	241	357	70	67	160	14	44	copy fasta	OOSP1	chr11	59933432	59962480
OOSP1_chr11_59933432_59962480	0/0	t0002	242	29	26	3	0	0	0	copy fasta	OOSP1	chr11	59933432	59962480
OOSP2_chr11_60035409_60053044	1/1	t0001	1023	108	52	14	27	5	8	copy fasta	OOSP2	chr11	60035409	60053044
OOSP2_chr11_60035409_60053044	0/0	t0002	1023	80	16	4	38	9	13	copy fasta	OOSP2	chr11	60035409	60053044
OOSP2_chr11_60035409_60053044	0/0	t0003	1023	3	0	0	0	0	3	copy fasta	OOSP2	chr11	60035409	60053044
OOSP2_chr11_60035409_60053044	0/0	t0004	1023	2	2	0	0	0	0	copy fasta	OOSP2	chr11	60035409	60053044
OOSP2_chr11_60035409_60053044	0/0	t0005	1023	2	0	0	0	0	2	copy fasta	OOSP2	chr11	60035409	60053044
OOSP2_chr11_60035409_60053044	0/0	t0006	1023	1	1	0	0	0	0	copy fasta	OOSP2	chr11	60035409	60053044
OOSP2_chr11_60035409_60053044	0/0	t0007	1023	1	1	0	0	0	0	copy fasta	OOSP2	chr11	60035409	60053044
OOSP2_chr11_60035409_60053044	0/0	t0008	1023	1	0	0	1	0	0	copy fasta	OOSP2	chr11	60035409	60053044
OOSP3_chr11_59873782_59901483	1/1	t0001	298	332	83	75	122	12	38	copy fasta	OOSP3	chr11	59873782	59901483
OOSP3_chr11_59873782_59901483	0/0	t0002	298	5	4	1	0	0	0	copy fasta	OOSP3	chr11	59873782	59901483
OOSP3_chr11_59873782_59901483	0/0	t0003	298	5	5	0	0	0	0	copy fasta	OOSP3	chr11	59873782	59901483
OOSP4A_chr11_59959033_59975343	1/1	t0001	220	409	91	78	188	12	38	copy fasta	OOSP4A	chr11	59959033	59975343