JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OOSP4A_chr11_59959033_59975343	0/0	t0002	220	3	3	0	0	0	0	copy fasta	OOSP4A	chr11	59959033	59975343
OOSP4B_chr11_60012181_60036095	1/1	t0001	473	324	79	55	147	15	26	copy fasta	OOSP4B	chr11	60012181	60036095
OOSP4B_chr11_60012181_60036095	0/0	t0002	473	68	9	9	39	1	10	copy fasta	OOSP4B	chr11	60012181	60036095
OOSP4B_chr11_60012181_60036095	0/0	t0003	473	2	0	2	0	0	0	copy fasta	OOSP4B	chr11	60012181	60036095
OOSP4B_chr11_60012181_60036095	0/0	t0004	473	2	2	0	0	0	0	copy fasta	OOSP4B	chr11	60012181	60036095
OPA1_chr3_193588208_193702811	0/1	t0001	3382	108	21	21	50	3	12	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0002	3382	95	18	15	49	5	8	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0003	3382	83	15	12	45	1	10	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	1/0	t0004	3382	30	7	10	3	5	4	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0005	3382	12	5	2	4	0	1	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0006	3382	12	2	0	10	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0007	3382	7	6	1	0	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0008	3382	7	0	2	5	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0009	3382	5	5	0	0	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0010	3382	5	0	0	5	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0011	3382	4	2	1	0	1	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0012	3382	3	0	0	3	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0013	3382	2	0	0	0	0	2	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0014	3382	2	2	0	0	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0015	3382	2	0	2	0	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0016	3382	1	0	0	0	0	1	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0017	3382	1	1	0	0	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0018	3382	1	1	0	0	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0019	3382	1	0	0	1	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0020	3382	1	0	0	0	1	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0021	3382	1	0	0	0	0	1	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0022	3382	1	1	0	0	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0023	3382	1	0	0	1	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0024	3382	1	1	0	0	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0025	3382	1	1	0	0	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	t0026	3382	1	0	0	0	0	1	copy fasta	OPA1	chr3	193588208	193702811
OPA3_chr19_45541281_45589802	0/0	t0001	7270	25	1	1	17	1	5	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0002	7272	23	4	9	7	1	2	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0003	7264	18	1	5	9	0	3	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0004	7271	18	0	6	9	0	3	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0005	7271	14	2	2	5	0	5	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/1	t0006	7275	14	1	5	5	2	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0007	7272	14	1	2	5	2	4	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0008	7278	13	3	0	10	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	1/0	t0009	7272	13	6	0	5	1	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0010	7270	11	1	3	4	0	3	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0011	7275	8	0	3	4	1	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0012	7275	7	6	1	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0013	7275	7	0	4	2	1	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0014	7274	7	0	1	6	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0015	7270	6	0	2	4	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0016	7275	5	0	2	3	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0017	7275	4	4	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0018	7271	4	1	0	3	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0019	7275	4	0	2	0	1	1	copy fasta	OPA3	chr19	45541281	45589802