JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OPA3_chr19_45541281_45589802	0/0	t0020	7270	4	0	0	4	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0021	7264	3	2	0	0	0	1	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0022	7264	3	0	0	3	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0023	7264	3	0	0	3	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0024	7270	3	0	2	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0025	7271	3	3	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0026	7271	3	0	0	3	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0027	7279	3	1	0	1	1	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0028	7271	3	2	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0029	7272	3	0	2	0	1	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0030	7274	3	3	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0031	7276	2	0	2	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0032	7275	2	1	1	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0033	7279	2	2	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0034	7265	2	0	0	2	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0035	7264	2	2	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0036	7264	2	0	0	2	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0037	7264	2	2	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0038	7263	2	0	2	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0039	7270	2	0	0	0	1	1	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0040	7275	2	0	0	2	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0041	7271	2	0	0	2	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0042	7278	2	0	1	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0043	7274	2	2	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0044	7272	2	0	0	2	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0045	7273	2	0	0	1	0	1	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0046	7272	2	0	0	2	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0047	7274	2	1	1	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0048	7268	2	2	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0049	7270	2	0	0	2	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0050	7270	2	1	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0051	7278	2	0	0	2	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0052	7272	1	0	0	0	0	1	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0053	7278	1	0	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0054	7275	1	0	1	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0055	7276	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0056	7275	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0057	7275	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0058	7275	1	0	0	0	0	1	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0059	7268	1	0	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0060	7265	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0061	7265	1	0	1	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0062	7266	1	0	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0063	7265	1	0	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0064	7264	1	0	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0065	7265	1	0	0	0	0	1	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0066	7265	1	0	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0067	7264	1	0	1	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0068	7265	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0069	7264	1	0	1	0	0	0	copy fasta	OPA3	chr19	45541281	45589802