JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OPA3_chr19_45541281_45589802	0/0	t0120	7274	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0121	7274	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0122	7278	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0123	7278	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0124	7271	1	0	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0125	7265	1	0	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0126	7271	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0127	7271	1	0	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0128	7272	1	0	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0129	7275	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0130	7272	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0131	7273	1	0	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0132	7273	1	0	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0133	7272	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0134	7272	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0135	7276	1	0	0	0	0	1	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0136	7272	1	0	1	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0137	7272	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0138	7272	1	0	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0139	7273	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0140	7272	1	0	1	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0141	7272	1	0	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0142	7272	1	0	0	0	0	1	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0143	7272	1	0	0	0	0	1	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0144	7272	1	0	0	0	1	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0145	7274	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0146	7274	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0147	7268	1	0	1	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0148	7279	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0149	7271	1	0	1	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0150	7271	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0151	7274	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0152	7273	1	0	1	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0153	7273	1	0	1	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0154	7274	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0155	7279	1	0	0	1	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0156	7270	1	0	0	0	0	1	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0157	7272	1	0	0	0	0	1	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	t0158	7272	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPALIN_chr10_96338221_96364002	0/1	t0001	2828	172	18	43	81	6	23	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0002	2824	68	7	6	51	0	4	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0003	2826	30	29	1	0	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0004	2824	28	1	5	11	2	9	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0005	2828	22	9	6	2	2	3	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0006	2828	18	0	5	13	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0007	2827	14	10	1	0	0	3	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0008	2827	7	6	1	0	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	1/0	t0009	2827	6	5	0	0	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0010	2824	4	0	0	4	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0011	2827	4	4	0	0	0	0	copy fasta	OPALIN	chr10	96338221	96364002