JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OPALIN_chr10_96338221_96364002	0/0	t0012	2827	3	3	0	0	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0013	2824	2	0	0	2	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0014	2824	2	0	0	1	0	1	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0015	2824	2	0	0	2	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0016	2826	2	1	1	0	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0017	2827	2	0	0	0	0	2	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0018	2827	2	2	0	0	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0019	2824	1	1	0	0	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0020	2824	1	0	0	1	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0021	2823	1	0	1	0	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0022	2824	1	0	1	0	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0023	2826	1	1	0	0	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0024	2828	1	0	0	0	1	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0025	2828	1	0	1	0	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0026	2828	1	0	0	1	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0027	2828	1	0	0	1	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0028	2828	1	0	0	0	1	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0029	2828	1	0	0	1	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0030	2828	1	0	0	1	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0031	2827	1	1	0	0	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	t0032	2824	1	0	0	0	0	1	copy fasta	OPALIN	chr10	96338221	96364002
OPCML_chr11_132409981_133537501	0/0	t0001	5390	9	6	1	0	0	2	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0002	5390	8	1	5	0	1	1	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0003	5390	7	5	1	0	1	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0004	5390	4	3	1	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0005	5390	4	3	1	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0006	5390	4	4	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0007	5390	2	2	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0008	5390	2	1	1	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0009	5390	2	1	1	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0010	5390	2	2	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0011	5390	2	2	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0012	5390	2	1	1	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0013	5390	1	1	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0014	5390	1	0	0	0	0	1	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0015	5390	1	0	1	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0016	5390	1	0	1	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0017	5390	1	1	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0018	5390	1	1	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0019	5390	1	1	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0020	5390	1	1	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0021	5390	1	1	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0022	5390	1	1	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0023	5390	1	1	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0024	5390	1	0	1	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0025	5390	1	1	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0026	5390	1	1	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0027	5390	1	1	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0028	5390	1	1	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0029	5390	1	1	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501