Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ART4_chr12_14820569_14848526	0/0	t0013	4218	2	2	0	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0014	4217	2	2	0	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0015	4216	2	0	2	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0016	4216	1	0	0	0	1	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0017	4216	1	0	0	0	0	1	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0018	4216	1	0	0	0	0	1	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0019	4216	1	0	1	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0020	4216	1	0	1	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0021	4216	1	0	0	0	0	1	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0022	4217	1	1	0	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0023	4217	1	0	1	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0024	4217	1	0	0	0	0	1	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0025	4218	1	1	0	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0026	4217	1	0	1	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0027	4217	1	1	0	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0028	4218	1	0	1	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	t0029	4217	1	0	0	1	0	0	copy fasta	ART4	chr12	14820569	14848526
ART5_chr11_3633512_3646992	0/0	t0001	356	186	15	23	108	10	30	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/1	t0002	357	151	30	34	71	4	11	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	t0003	357	28	6	6	12	2	2	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	t0004	357	18	1	0	17	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	t0005	357	16	13	3	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	t0006	357	13	12	1	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	t0007	356	11	1	0	9	0	1	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	t0008	357	10	7	1	2	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	t0009	356	5	4	1	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	1/0	t0010	357	4	3	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	t0011	357	3	2	1	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	t0012	338	3	0	3	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	t0013	357	2	0	2	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	t0014	357	1	0	0	1	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	t0015	356	1	1	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	t0016	357	1	0	1	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	t0017	357	1	1	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ARTN_chr1_43928801_43942240	1/0	t0001	777	204	83	19	87	2	12	copy fasta	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/1	t0002	777	137	8	35	64	6	23	copy fasta	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	t0003	777	40	0	3	34	0	3	copy fasta	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	t0004	777	5	0	1	0	2	2	copy fasta	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	t0005	777	2	2	0	0	0	0	copy fasta	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	t0006	777	2	0	0	0	2	0	copy fasta	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	t0007	777	2	0	2	0	0	0	copy fasta	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	t0008	777	1	0	0	1	0	0	copy fasta	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	t0009	777	1	1	0	0	0	0	copy fasta	ARTN	chr1	43928801	43942240
ARV1_chr1_230974094_231005733	1/1	t0001	613	383	77	63	181	16	44	copy fasta	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	t0002	613	7	0	6	1	0	0	copy fasta	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	t0003	613	6	5	1	0	0	0	copy fasta	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	t0004	613	5	5	0	0	0	0	copy fasta	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	t0005	613	1	1	0	0	0	0	copy fasta	ARV1	chr1	230974094	231005733
ARVCF_chr22_19964896_20021823	0/0	t0001	1168	134	18	20	82	5	9	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	1/0	t0002	1168	59	11	6	37	3	1	copy fasta	ARVCF	chr22	19964896	20021823