JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OPN4_chr10_86649547_86671460	0/0	t0014	947	2	0	0	2	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0015	947	1	0	0	1	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	1/0	t0016	947	1	0	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0017	947	1	0	0	1	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0018	947	1	0	0	1	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0019	947	1	0	0	1	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0020	947	1	0	0	1	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0021	947	1	1	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0022	947	1	0	1	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0023	947	1	0	1	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0024	947	1	1	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN5_chr6_47777032_47831381	0/0	t0001	2426	113	16	25	58	6	8	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	1/1	t0002	2426	77	34	15	11	4	11	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0003	2426	41	10	11	11	2	7	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0004	2426	33	7	9	14	0	3	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0005	2426	12	1	6	0	0	5	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0006	2426	8	8	0	0	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0007	2427	6	0	0	6	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0008	2426	4	4	0	0	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0009	2426	4	0	2	0	2	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0010	2426	4	0	4	0	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0011	2426	2	0	0	0	0	2	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0012	2426	2	0	0	2	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0013	2426	2	0	0	2	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0014	2426	1	1	0	0	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0015	2426	1	0	0	1	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0016	2426	1	1	0	0	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0017	2426	1	1	0	0	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0018	2426	1	1	0	0	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0019	2426	1	0	0	0	0	1	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0020	2426	1	0	0	1	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0021	2426	1	1	0	0	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0022	2426	1	0	0	1	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0023	2426	1	0	0	0	0	1	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0024	2426	1	1	0	0	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0025	2426	1	1	0	0	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0026	2426	1	1	0	0	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	t0027	2426	1	0	0	1	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPRD1_chr1_28807170_28876267	0/0	t0001	8198	44	5	10	25	0	4	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0002	8198	38	8	3	24	1	2	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0003	8198	29	0	11	8	6	4	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	1/0	t0004	8199	17	1	7	2	2	4	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/1	t0005	8196	15	1	3	7	0	3	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0006	8199	12	8	3	0	1	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0007	8199	11	7	3	0	0	1	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0008	8197	6	0	5	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0009	8199	6	6	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0010	8200	6	0	1	5	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0011	8198	5	0	0	5	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0012	8198	5	1	4	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267