JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OPRD1_chr1_28807170_28876267	0/0	t0013	8198	4	0	4	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0014	8199	4	0	0	4	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0015	8198	4	1	0	0	0	3	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0016	8194	4	3	1	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0017	8199	4	4	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0018	8198	4	0	4	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0019	8199	3	3	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0020	8198	3	0	2	0	0	1	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0021	8199	3	3	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0022	8199	3	2	1	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0023	8195	3	0	0	1	2	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0024	8196	3	3	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0025	8199	2	1	1	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0026	8199	2	2	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0027	8196	2	0	0	0	0	2	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0028	8198	2	0	0	2	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0029	8179	2	2	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0030	8199	2	2	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0031	8197	2	0	0	2	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0032	8199	2	0	1	0	0	1	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0033	8196	2	0	0	2	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0034	8197	2	2	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0035	8198	2	0	1	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0036	8198	1	0	1	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0037	8198	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0038	8199	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0039	8198	1	0	0	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0040	8197	1	0	0	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0041	8198	1	0	0	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0042	8199	1	0	0	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0043	8199	1	0	1	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0044	8194	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0045	8194	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0046	8194	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0047	8194	1	0	1	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0048	8200	1	0	0	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0049	8198	1	0	0	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0050	8199	1	0	1	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0051	8198	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0052	8198	1	0	0	0	0	1	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0053	8198	1	0	0	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0054	8198	1	0	0	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0055	8198	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0056	8196	1	0	0	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0057	8199	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0058	8199	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0059	8198	1	0	0	0	0	1	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0060	8199	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0061	8195	1	0	0	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0062	8196	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267