JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OPRD1_chr1_28807170_28876267	0/0	t0063	8194	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0064	8199	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0065	8198	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0066	8199	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0067	8198	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0068	8198	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0069	8198	1	0	1	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0070	8194	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0071	8199	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0072	8196	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0073	8196	1	0	1	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0074	8196	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0075	8196	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0076	8196	1	0	0	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0077	8198	1	0	0	0	0	1	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0078	8276	1	0	0	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0079	8197	1	0	1	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0080	8199	1	0	0	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	t0081	8199	1	1	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRK1_chr8_53220724_53256637	1/1	t0001	3812	174	9	37	101	7	18	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0002	3873	45	12	10	15	3	5	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0003	3812	23	4	1	6	2	10	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0004	3811	21	6	5	8	1	1	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0005	3811	13	13	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0006	3813	10	0	1	7	1	1	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0007	3812	9	6	1	0	0	2	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0008	3873	8	8	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0009	3807	7	7	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0010	3874	6	0	6	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0011	3812	6	1	3	0	2	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0012	3812	4	3	1	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0013	3873	4	0	1	0	0	3	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0014	3868	3	2	1	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0015	3811	3	2	1	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0016	3812	3	3	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0017	3873	2	2	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0018	3807	2	2	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0019	3879	2	1	0	1	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0020	3807	2	2	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0021	3812	2	0	2	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0022	3812	2	0	1	0	0	1	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0023	3874	1	1	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0024	3811	1	1	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0025	3807	1	1	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0026	3873	1	0	1	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0027	3867	1	1	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0028	3873	1	1	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0029	3873	1	0	0	1	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0030	3873	1	1	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0031	3879	1	1	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637