JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OPRK1_chr8_53220724_53256637	0/0	t0032	3807	1	1	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0033	3812	1	0	0	1	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0034	3812	1	0	1	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0035	3812	1	0	0	1	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0036	3812	1	0	0	1	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0037	3812	1	0	1	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0038	3812	1	0	0	0	0	1	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0039	3812	1	0	1	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0040	3812	1	0	1	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0041	3812	1	0	0	1	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0042	3812	1	0	0	1	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	t0043	3873	1	1	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRL1_chr20_64075082_64105633	0/0	t0001	2290	11	0	5	1	0	5	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0002	2289	9	3	1	1	0	4	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0003	2289	9	0	5	1	0	3	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	1/0	t0004	2290	8	5	2	0	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0005	2291	4	2	1	0	0	1	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0006	2288	3	3	0	0	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0007	2291	3	0	0	1	0	2	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0008	2290	2	0	1	0	0	1	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0009	2279	2	1	1	0	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0010	2291	2	0	0	0	0	2	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/1	t0011	2289	2	0	0	0	0	1	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0012	2290	2	0	1	1	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0013	2291	1	0	0	0	0	1	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0014	2290	1	1	0	0	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0015	2291	1	1	0	0	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0016	2290	1	0	0	0	0	1	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0017	2291	1	0	1	0	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0018	2292	1	0	0	0	0	1	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0019	2289	1	1	0	0	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0020	2288	1	1	0	0	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	t0021	2289	1	0	0	1	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRM1_chr6_154034240_154137356	0/0	t0001	13616	52	8	10	23	2	9	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0002	13613	13	1	2	6	2	2	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0003	13617	12	1	9	0	1	1	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0004	13615	12	1	0	10	0	1	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0005	13941	8	3	0	4	1	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0006	13616	7	1	0	6	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0007	13616	6	0	0	6	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0008	13604	5	0	4	0	1	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0009	13616	4	0	2	2	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0010	13615	4	0	2	0	0	2	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0011	13616	4	4	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0012	13614	3	3	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0013	13616	3	0	0	3	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0014	13613	3	3	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0015	13617	3	3	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0016	13933	2	2	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0017	13612	2	0	0	0	2	0	copy fasta	OPRM1	chr6	154034240	154137356