JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OPRM1_chr6_154034240_154137356	1/0	t0018	13941	2	0	1	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0019	13942	2	2	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0020	13942	2	0	2	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0021	13939	2	2	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0022	13616	2	0	0	2	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0023	13617	2	2	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0024	13616	2	2	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/1	t0025	13616	2	0	1	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0026	13614	2	0	2	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0027	13616	2	0	0	0	2	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0028	13616	2	2	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0029	13616	2	0	0	0	2	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0030	13616	2	2	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0031	13617	2	0	2	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0032	13616	2	0	1	0	0	1	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0033	13617	2	2	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0034	13942	2	2	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0035	13613	2	0	0	0	0	2	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0036	13945	2	2	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0037	13921	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0038	13934	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0039	13616	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0040	13940	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0041	13613	1	0	0	1	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0042	13613	1	0	0	1	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0043	13613	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0044	13598	1	0	0	1	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0045	13613	1	0	1	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0046	13615	1	0	0	1	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0047	13613	1	0	1	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0048	13948	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0049	13942	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0050	13942	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0051	13945	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0052	13941	1	0	1	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0053	13939	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0054	13943	1	0	1	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0055	13942	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0056	13944	1	0	1	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0057	13942	1	0	1	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0058	13937	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0059	13938	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0060	13933	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0061	13936	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0062	13949	1	0	1	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0063	13616	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0064	13616	1	0	0	0	1	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0065	13616	1	0	0	0	0	1	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0066	13618	1	0	1	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0067	13616	1	0	1	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356