JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OPRM1_chr6_154034240_154137356	0/0	t0118	13616	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0119	13616	1	0	0	0	0	1	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0120	13614	1	0	0	1	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0121	13616	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0122	13948	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	t0123	13615	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRPN_chr4_70392940_70415195	0/0	t0001	241	251	50	30	144	9	18	copy fasta	OPRPN	chr4	70392940	70415195
OPRPN_chr4_70392940_70415195	1/1	t0002	237	205	44	50	72	7	30	copy fasta	OPRPN	chr4	70392940	70415195
OPTC_chr1_203489153_203513949	1/1	t0001	436	381	86	58	182	10	43	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	t0002	436	13	0	13	0	0	0	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	t0003	436	6	5	1	0	0	0	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	t0004	436	4	0	0	1	0	3	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	t0005	436	1	1	0	0	0	0	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	t0006	436	1	0	0	1	0	0	copy fasta	OPTC	chr1	203489153	203513949
OPTN_chr10_13095163_13143308	1/0	t0001	1746	291	69	50	136	7	28	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	t0002	1746	36	12	3	13	5	3	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	t0003	1746	31	0	10	15	3	3	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/1	t0004	1746	28	0	7	15	1	4	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	t0005	1746	16	0	1	13	0	2	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	t0006	1746	5	4	1	0	0	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	t0007	1746	2	0	0	0	0	2	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	t0008	1746	2	0	0	0	2	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	t0009	1746	2	2	0	0	0	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	t0010	1746	1	1	0	0	0	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	t0011	1746	1	1	0	0	0	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	t0012	1746	1	1	0	0	0	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	t0013	1746	1	1	0	0	0	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	t0014	1746	1	1	0	0	0	0	copy fasta	OPTN	chr10	13095163	13143308
OR10A2_chr11_6858057_6879717	0/0	t0001	4482	99	14	12	59	2	12	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0002	4484	83	5	12	53	6	7	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/1	t0003	4450	49	2	19	20	3	4	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0004	4490	39	2	3	27	1	6	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0005	4480	39	3	10	23	1	2	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0006	4480	10	9	1	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0007	4486	9	0	5	2	1	1	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0008	4481	8	6	2	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0009	4479	7	7	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0010	4489	6	1	0	5	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0011	4491	6	1	2	3	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0012	4481	6	5	1	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0013	4490	5	0	0	5	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0014	4481	5	0	2	2	1	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0015	4485	4	4	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0016	4454	4	0	0	4	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0017	4456	3	3	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0018	4484	3	3	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0019	4484	3	0	1	0	0	2	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0020	4455	3	3	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0021	4455	3	3	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0022	4479	3	3	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717