JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR10A2_chr11_6858057_6879717	0/0	t0023	4481	3	0	1	1	0	1	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0024	4481	3	3	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0025	4481	3	3	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0026	4482	3	2	1	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0027	4450	3	0	3	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0028	4450	3	0	3	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0029	4484	2	0	0	2	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0030	4455	2	2	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0031	4490	2	0	0	2	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0032	4484	2	0	0	0	0	2	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0033	4481	2	1	1	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0034	4479	2	0	0	2	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	1/0	t0035	4479	2	1	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0036	4482	2	0	0	2	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0037	4482	2	2	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0038	4445	2	0	1	0	0	1	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0039	4486	2	2	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0040	4485	1	1	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0041	4484	1	1	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0042	4486	1	0	0	1	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0043	4484	1	0	0	1	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0044	4484	1	0	0	0	0	1	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0045	4484	1	0	0	0	1	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0046	4486	1	0	0	1	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0047	4491	1	0	0	1	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0048	4489	1	0	1	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0049	4490	1	1	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0050	4480	1	1	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0051	4480	1	0	0	1	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0052	4481	1	0	0	1	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0053	4480	1	1	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0054	4481	1	1	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0055	4479	1	1	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0056	4480	1	0	0	0	0	1	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0057	4481	1	0	0	1	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0058	4482	1	0	0	1	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0059	4482	1	0	0	0	0	1	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0060	4482	1	0	1	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0061	4482	1	0	0	1	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0062	4480	1	0	0	1	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0063	4481	1	0	0	1	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0064	4482	1	0	0	0	0	1	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0065	4482	1	1	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0066	4479	1	0	0	1	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0067	4450	1	0	0	1	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0068	4451	1	0	0	1	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0069	4451	1	0	1	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	t0070	4450	1	0	1	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A3_chr11_7932171_7946708	0/0	t0001	1703	149	5	25	99	5	15	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0002	1704	62	0	12	42	1	7	copy fasta	OR10A3	chr11	7932171	7946708