JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR10A3_chr11_7932171_7946708	0/1	t0003	1704	34	0	17	12	2	2	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0004	1705	32	12	7	0	6	7	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0005	1705	31	6	3	11	3	8	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0006	1706	28	3	6	17	0	2	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0007	1703	15	12	3	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0008	1705	9	1	0	8	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0009	1706	7	7	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0010	1705	6	6	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0011	1706	6	6	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0012	1705	5	5	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0013	1705	4	4	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0014	1706	4	0	0	3	1	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0015	1705	4	4	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0016	1703	3	3	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0017	1706	3	3	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0018	1704	3	3	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0019	1704	3	0	1	2	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0020	1706	2	2	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0021	1705	2	1	1	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0022	1704	2	0	2	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0023	1703	2	0	0	2	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0024	1706	2	2	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0025	1703	2	0	0	1	0	1	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0026	1703	2	0	0	0	0	2	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0027	1704	1	1	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0028	1705	1	1	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0029	1706	1	1	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0030	1706	1	0	0	1	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0031	1703	1	0	1	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0032	1703	1	0	1	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0033	1703	1	0	1	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0034	1704	1	0	0	1	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0035	1705	1	1	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0036	1706	1	1	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0037	1706	1	0	0	1	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0038	1703	1	0	0	1	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0039	1704	1	1	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0040	1704	1	1	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0041	1704	1	0	0	1	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0042	1705	1	0	0	0	0	1	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0043	1705	1	0	0	1	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0044	1706	1	0	1	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0045	1706	1	0	1	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0046	1705	1	0	0	1	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0047	1706	1	1	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0048	1703	1	0	0	0	0	1	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0049	1704	1	0	0	1	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0050	1705	1	0	0	1	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	t0051	1705	1	1	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A4_chr11_6871625_6882619	1/1	t0001	48	446	94	82	210	18	40	copy fasta	OR10A4	chr11	6871625	6882619