Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARVCF_chr22_19964896_20021823	0/0	t0003	1168	56	9	18	19	2	8	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0004	1168	52	34	12	0	1	5	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0005	1168	14	1	6	2	0	5	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0006	1168	13	8	0	4	1	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0007	1168	12	0	3	6	0	3	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0008	1163	6	4	2	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0009	1168	4	4	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0010	1168	4	4	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0011	1168	2	1	1	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0012	1168	2	0	0	0	0	2	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0013	1168	2	1	1	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0014	1168	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0015	1168	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0016	1168	1	0	0	0	0	1	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0017	1168	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0018	1168	1	0	1	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0019	1168	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0020	1168	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0021	1168	1	0	0	0	1	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/1	t0022	1168	1	0	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0023	1168	1	1	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0024	1149	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0025	1168	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0026	1168	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	t0027	1168	1	0	0	0	1	0	copy fasta	ARVCF	chr22	19964896	20021823
ARX_chrX_24998694_25020965	0/0	t0001	1204	145	13	31	80	4	17	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	1/0	t0002	1205	138	59	20	38	7	13	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	t0003	1206	3	1	1	1	0	0	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	t0004	1203	2	0	1	1	0	0	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	t0005	1205	1	0	0	0	0	1	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	t0006	1200	1	0	0	1	0	0	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	t0007	1205	1	0	0	1	0	0	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	t0008	1204	1	0	0	1	0	0	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	t0009	1205	1	0	0	0	0	1	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	t0010	1204	1	0	0	1	0	0	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/1	t0011	1204	1	0	0	0	0	0	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	t0012	1204	1	0	0	1	0	0	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	t0013	1203	1	0	0	1	0	0	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	t0014	1203	1	0	1	0	0	0	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	t0015	1206	1	0	0	1	0	0	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	t0016	1205	1	1	0	0	0	0	copy fasta	ARX	chrX	24998694	25020965
AR_chrX_67539021_67735619	0/0	t0001	7906	35	0	7	20	3	5	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0002	7904	14	0	3	9	1	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0003	7908	13	0	2	10	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0004	7905	9	9	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0005	7907	9	8	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0006	7907	7	4	2	0	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	1/0	t0007	7905	7	5	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0008	7902	7	0	0	6	1	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/1	t0009	7914	7	0	2	3	0	1	copy fasta	AR	chrX	67539021	67735619