JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR10A6_chr11_7919592_7936268	0/0	t0101	5126	1	0	1	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0102	5120	1	0	1	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0103	5144	1	0	0	0	0	1	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0104	5162	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0105	5156	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0106	5152	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0107	5132	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0108	5160	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0109	5158	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0110	5176	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0111	5126	1	0	0	0	1	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0112	5158	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0113	5164	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0114	5145	1	0	0	0	0	1	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0115	5108	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0116	5110	1	0	0	0	0	1	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0117	5084	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0118	5102	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0119	5101	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0120	5103	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0121	5105	1	0	0	0	0	1	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0122	5108	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0123	5108	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0124	5108	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0125	5108	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0126	5108	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0127	5107	1	0	0	0	0	1	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0128	5108	1	0	1	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0129	5110	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0130	5110	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0131	5110	1	0	1	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0132	5110	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0133	5110	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0134	5109	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0135	5112	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0136	5113	1	0	1	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0137	5112	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0138	5112	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0139	5107	1	0	1	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0140	5112	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0141	5111	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0142	5112	1	0	0	0	0	1	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0143	5114	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0144	5114	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0145	5114	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0146	5113	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0147	5116	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0148	5116	1	0	1	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0149	5118	1	0	1	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0150	5120	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268