JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR10A6_chr11_7919592_7936268	0/0	t0201	5123	1	0	1	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0202	5159	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0203	5147	1	0	0	0	0	1	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0204	5161	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0205	5161	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0206	5159	1	0	1	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0207	5157	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0208	5155	1	0	0	0	0	1	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0209	5165	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0210	5163	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0211	5161	1	0	1	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0212	5104	1	0	1	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0213	5147	1	0	0	0	1	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	t0214	5143	1	0	1	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10AG1_chr11_55960755_55974945	0/0	t0001	1840	89	8	18	53	2	8	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0002	1840	71	19	11	32	2	7	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0003	1838	43	1	9	29	0	4	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0004	1840	31	6	0	23	0	2	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0005	1840	31	0	1	25	2	3	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0006	1839	29	15	9	0	2	3	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0007	1838	28	0	9	16	1	2	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0008	1839	21	1	2	15	2	1	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0009	1842	10	6	0	4	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0010	1841	9	0	3	5	0	1	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	1/0	t0011	1842	8	0	0	7	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0012	1839	7	0	1	4	0	2	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0013	1841	6	6	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0014	1839	6	5	1	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/1	t0015	1840	6	0	5	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0016	1840	5	1	2	0	2	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0017	1844	5	4	0	0	1	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0018	1839	4	2	1	1	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0019	1842	4	0	0	2	0	2	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0020	1839	3	3	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0021	1839	3	3	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0022	1840	3	2	1	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0023	1842	3	0	2	0	0	1	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0024	1864	2	2	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0025	1842	2	2	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0026	1838	2	0	0	0	0	2	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0027	1840	2	0	0	0	0	2	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0028	1860	1	1	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0029	1841	1	1	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0030	1842	1	1	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0031	1842	1	0	0	1	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0032	1839	1	1	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0033	1842	1	1	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0034	1840	1	0	0	1	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0035	1840	1	0	1	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0036	1839	1	0	0	0	1	0	copy fasta	OR10AG1	chr11	55960755	55974945