JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR10AG1_chr11_55960755_55974945	0/0	t0037	1840	1	0	0	1	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0038	1842	1	1	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0039	1840	1	1	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0040	1840	1	1	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0041	1839	1	1	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0042	1840	1	0	0	1	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0043	1840	1	0	0	0	1	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0044	1840	1	0	0	1	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0045	1840	1	1	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	t0046	1840	1	0	0	1	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10C1_chr6_29434306_29445977	0/1	t0001	734	400	80	70	194	12	43	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	t0002	734	35	9	4	22	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	t0003	734	7	7	0	0	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	t0004	734	4	0	2	0	2	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	t0005	734	2	0	0	1	0	1	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	t0006	734	1	0	0	1	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	t0007	734	1	0	0	1	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	t0008	734	1	0	0	1	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10D3_chr11_124178345_124193780	0/0	t0001	2628	100	1	15	69	7	8	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	1/0	t0002	2623	88	17	20	33	1	16	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0003	2625	55	6	8	33	2	6	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0004	2625	35	1	13	17	1	3	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0005	2625	19	0	0	14	0	5	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0006	2626	18	13	3	2	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0007	2625	16	2	5	8	0	1	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/1	t0008	2629	7	0	3	1	0	2	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0009	2624	6	0	0	2	0	4	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0010	2625	6	0	4	0	1	1	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0011	2623	5	0	0	5	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0012	2626	5	5	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0013	2626	5	5	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0014	2625	4	4	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0015	2627	4	0	0	4	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0016	2624	3	3	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0017	2624	3	3	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0018	2625	3	3	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0019	2625	3	3	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0020	2625	3	3	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0021	2626	3	0	0	3	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0022	2627	3	3	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0023	2623	2	2	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0024	2625	2	0	0	2	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0025	2625	2	2	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0026	2625	2	2	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0027	2626	2	2	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0028	2626	2	2	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0029	2627	2	2	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0030	2623	1	0	0	1	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0031	2623	1	0	0	0	1	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0032	2623	1	1	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780