JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR10D3_chr11_124178345_124193780	0/0	t0033	2623	1	1	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0034	2623	1	1	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0035	2624	1	1	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0036	2624	1	0	0	1	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0037	2625	1	0	0	1	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0038	2625	1	0	0	1	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0039	2625	1	0	1	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0040	2625	1	0	0	1	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0041	2626	1	0	0	1	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0042	2626	1	1	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0043	2626	1	1	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0044	2626	1	1	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0045	2626	1	0	0	1	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0046	2626	1	1	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0047	2626	1	0	0	1	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0048	2628	1	0	0	1	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0049	2628	1	0	0	1	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0050	2628	1	0	0	0	1	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0051	2628	1	0	1	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0052	2629	1	0	0	1	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0053	2623	1	0	1	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0054	2625	1	0	1	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0055	2624	1	1	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0056	2625	1	1	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	t0057	2628	1	0	1	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10G2_chr14_21628836_21639940	1/1	t0001	173	468	98	86	223	17	42	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	t0002	173	3	0	0	0	1	2	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	t0003	173	1	1	0	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	t0004	173	1	1	0	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	t0005	173	1	0	0	1	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G3_chr14_21563520_21585076	0/0	t0001	1589	94	1	14	73	0	6	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0002	1592	93	18	19	41	3	12	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/1	t0003	1589	49	18	8	16	2	4	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0004	1589	46	2	2	41	0	1	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0005	1589	24	0	18	5	0	1	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0006	1592	22	17	2	0	3	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0007	1589	17	5	2	1	2	7	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0008	1592	13	1	1	7	2	2	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0009	1589	12	0	2	2	2	6	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0010	1589	7	0	0	7	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0011	1591	5	5	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0012	1590	5	5	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0013	1589	4	4	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0014	1589	4	4	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0015	1589	3	0	3	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0016	1591	3	3	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0017	1589	3	0	1	0	2	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0018	1589	3	0	0	3	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0019	1589	3	0	1	2	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0020	1592	3	0	0	0	0	3	copy fasta	OR10G3	chr14	21563520	21585076