JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR10G3_chr14_21563520_21585076	0/0	t0021	1589	3	0	2	1	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0022	1592	2	2	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0023	1592	2	2	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0024	1590	2	2	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0025	1589	2	0	0	2	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0026	1592	2	0	0	2	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0027	1592	2	2	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0028	1592	1	0	0	0	0	1	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0029	1589	1	0	0	1	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	1/0	t0030	1592	1	0	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0031	1591	1	0	0	1	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0032	1589	1	0	0	0	0	1	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0033	1589	1	0	0	1	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0034	1590	1	0	0	1	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0035	1592	1	0	0	1	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0036	1589	1	0	0	1	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0037	1591	1	0	0	1	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0038	1591	1	1	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0039	1592	1	1	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0040	1592	1	0	1	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	t0041	1591	1	1	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G4_chr11_124007997_124023732	0/1	t0001	2366	321	54	53	166	15	32	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0002	2366	45	5	10	30	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0003	2366	24	13	7	0	1	3	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0004	2366	11	10	1	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0005	2366	3	3	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0006	2366	3	3	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	1/0	t0007	2366	3	0	2	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0008	2366	3	0	2	0	1	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0009	2366	2	0	1	0	0	1	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0010	2366	2	0	0	0	1	1	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0011	2366	2	2	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0012	2366	2	0	1	0	0	1	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0013	2366	2	2	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0014	2366	1	0	0	1	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0015	2366	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0016	2366	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0017	2366	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0018	2366	1	0	1	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0019	2366	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0020	2366	1	0	0	0	0	1	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0021	2366	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0022	2366	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0023	2366	1	0	0	1	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0024	2366	1	0	0	1	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0025	2366	1	0	0	1	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0026	2366	1	0	0	1	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0027	2366	1	0	0	0	0	1	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	t0028	2366	1	0	0	1	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G7_chr11_124031013_124046325	1/1	t0001	2514	350	53	68	172	14	41	copy fasta	OR10G7	chr11	124031013	124046325