JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR10G7_chr11_124031013_124046325	0/0	t0002	2515	43	1	11	31	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0003	2514	18	0	1	17	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0004	2514	15	15	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0005	2514	7	7	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0006	2509	6	5	1	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0007	2514	6	5	1	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0008	2514	6	0	1	0	1	4	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0009	2515	4	3	1	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0010	2515	3	3	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0011	2514	3	0	0	0	3	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0012	2514	2	0	0	2	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0013	2514	2	0	0	2	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0014	2514	2	2	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0015	2514	2	0	0	0	0	2	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0016	2514	1	0	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0017	2515	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0018	2515	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0019	2514	1	0	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0020	2514	1	0	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0021	2514	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0022	2514	1	0	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0023	2514	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0024	2514	1	0	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0025	2514	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0026	2514	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0027	2514	1	0	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	t0028	2514	1	0	0	0	0	1	copy fasta	OR10G7	chr11	124031013	124046325
OR10G8_chr11_124021798_124035634	1/1	t0001	174	443	98	81	202	18	42	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	t0002	174	3	2	1	0	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10H1_chr19_15799549_15820664	0/0	t0001	3482	85	8	22	38	2	15	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0002	3425	75	0	17	54	2	2	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/1	t0003	3415	47	6	7	25	3	5	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0004	3393	45	26	9	0	2	8	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0005	3421	19	0	5	11	0	3	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	1/0	t0006	3420	16	7	6	0	1	1	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0007	3393	12	12	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0008	3424	10	3	2	4	0	1	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0009	3425	10	0	0	10	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0010	3425	6	0	0	6	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0011	3426	5	0	1	4	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0012	3408	5	5	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0013	3394	4	3	1	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0014	3425	3	0	0	3	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0015	3409	3	3	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0016	3489	3	0	0	2	0	1	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0017	3392	3	2	0	0	0	1	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0018	3421	2	1	0	0	0	1	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0019	3482	2	0	0	0	0	2	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0020	3421	2	0	0	0	0	2	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0021	3421	2	2	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664