JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR10H1_chr19_15799549_15820664	0/0	t0022	3393	2	2	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0023	3409	2	2	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0024	3416	2	0	1	0	0	1	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0025	3415	2	0	0	0	2	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0026	3415	2	0	1	0	1	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0027	3414	2	0	0	1	0	1	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0028	3425	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0029	3425	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0030	3425	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0031	3426	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0032	3425	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0033	3425	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0034	3425	1	0	1	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0035	3360	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0036	3413	1	1	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0037	3413	1	0	0	0	0	1	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0038	3421	1	1	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0039	3417	1	1	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0040	3415	1	1	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0041	3400	1	1	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0042	3421	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0043	3422	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0044	3392	1	1	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0045	3396	1	0	0	0	1	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0046	3392	1	1	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0047	3482	1	0	1	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0048	3482	1	0	1	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0049	3425	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0050	3419	1	1	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0051	3412	1	1	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0052	3482	1	0	0	0	0	1	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0053	3393	1	0	1	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	t0054	3392	1	1	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H2_chr19_15723024_15734052	1/1	t0001	82	413	91	80	180	18	42	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	t0002	82	1	1	0	0	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H3_chr19_15732985_15747343	1/1	t0001	79	351	50	63	195	13	28	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/0	t0002	79	66	36	13	1	4	12	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/0	t0003	79	1	0	0	0	1	0	copy fasta	OR10H3	chr19	15732985	15747343
OR10H5_chr19_15782661_15805357	0/0	t0001	5431	53	2	7	44	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0002	5428	30	17	7	0	2	4	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0003	5429	28	3	15	6	0	4	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/1	t0004	5427	19	0	4	4	5	5	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0005	5432	17	0	4	13	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0006	5432	9	0	3	3	0	3	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0007	5433	7	0	0	7	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0008	5431	7	0	5	0	2	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0009	5428	7	2	2	0	0	3	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0010	5432	7	0	0	7	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	1/0	t0011	5429	7	2	1	0	1	2	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0012	5428	6	0	1	5	0	0	copy fasta	OR10H5	chr19	15782661	15805357