Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AR_chrX_67539021_67735619	0/0	t0010	7909	5	3	0	0	1	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0011	7909	5	3	2	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0012	7896	5	0	2	0	0	3	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0013	7888	4	0	0	4	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0014	7900	3	0	0	2	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0015	7912	3	1	0	1	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0016	7916	3	0	1	0	1	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0017	7907	2	0	0	1	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0018	7903	2	2	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0019	7915	2	1	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0020	7901	2	2	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0021	7903	2	2	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0022	7910	2	0	0	2	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0023	7906	1	0	0	0	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0024	7905	1	0	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0025	7910	1	0	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0026	7919	1	0	0	0	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0027	7905	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0028	7907	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0029	7917	1	0	0	0	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0030	7906	1	0	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0031	7906	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0032	7905	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0033	7903	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0034	7905	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0035	7901	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0036	7917	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0037	7904	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0038	7902	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0039	7921	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0040	7905	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0041	7907	1	0	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0042	7911	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0043	7903	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0044	7905	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0045	7907	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0046	7911	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0047	7917	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0048	7919	1	0	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0049	7910	1	0	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0050	7907	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0051	7903	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0052	7895	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0053	7906	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0054	7904	1	0	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0055	7900	1	0	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0056	7890	1	0	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0057	7892	1	0	0	0	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0058	7902	1	0	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	t0059	7916	1	0	0	0	0	1	copy fasta	AR	chrX	67539021	67735619