JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR10H5_chr19_15782661_15805357	0/0	t0013	5429	6	0	0	6	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0014	5428	6	6	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0015	5427	6	6	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0016	5428	5	0	0	3	0	2	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0017	5429	5	2	1	0	0	2	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0018	5433	4	0	0	3	0	1	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0019	5426	4	0	0	4	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0020	5428	4	4	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0021	5430	4	0	0	1	1	2	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0022	5427	4	4	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0023	5432	3	0	1	2	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0024	5432	3	1	0	2	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0025	5427	3	0	0	3	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0026	5427	3	0	0	3	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0027	5428	3	0	0	1	1	1	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0028	5430	3	1	0	1	1	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0029	5430	3	0	0	3	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0030	5430	3	0	2	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0031	5429	3	1	2	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0032	5431	2	0	0	2	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0033	5428	2	0	0	1	0	1	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0034	5427	2	0	0	2	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0035	5427	2	2	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0036	5427	2	1	1	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0037	5427	2	0	2	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0038	5426	2	2	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0039	5429	2	0	1	0	0	1	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0040	5430	2	0	2	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0041	5431	2	0	0	0	0	2	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0042	5429	2	0	0	2	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0043	5429	2	0	0	2	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0044	5431	2	2	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0045	5429	2	2	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0046	5428	2	0	2	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0047	5430	2	0	2	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0048	5430	2	0	1	0	0	1	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0049	5432	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0050	5432	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0051	5433	1	0	0	0	0	1	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0052	5433	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0053	5432	1	0	1	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0054	5428	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0055	5431	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0056	5428	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0057	5432	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0058	5434	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0059	5432	1	0	0	0	0	1	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0060	5433	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0061	5431	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0062	5431	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357