JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR10H5_chr19_15782661_15805357	0/0	t0113	5428	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0114	5431	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0115	5431	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0116	5432	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0117	5433	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0118	5433	1	0	0	0	0	1	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0119	5428	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0120	5429	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0121	5427	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0122	5429	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0123	5427	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0124	5428	1	0	1	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0125	5430	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0126	5429	1	0	0	0	0	1	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0127	5430	1	0	0	0	0	1	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0128	5428	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0129	5428	1	0	1	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0130	5428	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0131	5428	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0132	5426	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0133	5428	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0134	5427	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0135	5427	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0136	5430	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0137	5428	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	t0138	5427	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10J1_chr1_159434722_159445967	0/1	t0001	317	420	71	71	217	16	44	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	1/0	t0002	317	32	22	5	1	0	3	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	t0003	317	3	3	0	0	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	t0004	317	1	0	0	0	0	1	copy fasta	OR10J1	chr1	159434722	159445967
OR10K1_chr1_158456834_158472458	1/1	t0001	1183	113	13	20	59	5	14	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0002	1182	90	5	19	58	1	7	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0003	1182	85	13	14	42	4	12	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0004	1184	65	0	10	41	2	12	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0005	1183	12	12	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0006	1183	12	8	1	3	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0007	1183	11	11	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0008	1182	8	0	5	1	0	2	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0009	1182	7	2	4	0	1	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0010	1182	7	7	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0011	1182	7	7	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0012	1183	5	5	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0013	1183	4	0	0	4	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0014	1181	3	3	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0015	1181	3	0	0	1	2	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0016	1182	2	2	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0017	1182	2	2	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0018	1184	2	0	1	0	1	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0019	1182	2	0	2	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0020	1182	1	0	1	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458