JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR10K1_chr1_158456834_158472458	0/0	t0021	1183	1	0	0	1	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0022	1182	1	0	1	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0023	1182	1	1	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0024	1183	1	0	0	0	0	1	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0025	1182	1	1	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0026	1183	1	1	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0027	1183	1	1	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0028	1182	1	0	0	1	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	t0029	1181	1	0	0	1	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K2_chr1_158413210_158431237	1/0	t0001	2085	211	36	42	106	8	18	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0002	2087	40	0	2	31	3	4	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0003	2087	30	14	9	0	1	6	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/1	t0004	2086	24	6	4	10	0	3	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0005	2085	12	10	1	0	0	1	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0006	2088	12	0	1	10	0	1	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0007	2087	7	2	4	0	1	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0008	2086	6	6	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0009	2084	6	6	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0010	2088	6	0	3	0	1	2	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0011	2085	5	0	0	0	0	5	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0012	2084	5	0	4	0	1	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0013	2086	4	1	1	0	1	1	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0014	2085	3	0	0	3	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0015	2086	2	0	0	0	0	2	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0016	2084	2	2	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0017	2086	2	2	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0018	2085	1	0	0	1	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0019	2085	1	0	0	1	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0020	2086	1	0	0	0	0	1	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0021	2087	1	0	0	1	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0022	2086	1	1	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0023	2085	1	0	0	1	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0024	2085	1	0	0	1	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0025	2085	1	0	1	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0026	2085	1	0	0	0	0	1	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0027	2085	1	0	0	1	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0028	2087	1	1	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0029	2085	1	1	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0030	2086	1	1	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0031	2085	1	0	1	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0032	2086	1	1	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0033	2085	1	1	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0034	2086	1	0	1	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0035	2085	1	0	0	1	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0036	2087	1	0	0	1	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0037	2087	1	1	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0038	2086	1	0	0	1	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0039	2085	1	0	0	1	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	t0040	2085	1	0	0	0	0	1	copy fasta	OR10K2	chr1	158413210	158431237
OR10Q1_chr11_58222882_58233918	1/1	t0001	78	456	100	82	210	16	46	copy fasta	OR10Q1	chr11	58222882	58233918