JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR10R2_chr1_158467220_158485936	1/1	t0001	158	444	94	76	208	16	48	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	t0002	158	2	2	0	0	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10S1_chr11_123971661_123982781	1/0	t0001	153	342	91	54	150	11	35	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/1	t0002	153	102	4	22	58	3	14	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	t0003	153	2	0	0	2	0	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	t0004	153	1	0	0	0	0	1	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	t0005	153	1	1	0	0	0	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10W1_chr11_58261792_58273260	1/1	t0001	552	329	68	63	145	13	38	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	t0002	552	22	16	0	5	1	0	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	t0003	552	10	9	1	0	0	0	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	t0004	552	1	1	0	0	0	0	copy fasta	OR10W1	chr11	58261792	58273260
OR10Z1_chr1_158600268_158617514	0/0	t0001	5380	84	3	16	48	1	16	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0002	5380	71	5	20	37	3	6	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0003	5391	41	1	2	33	2	3	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	1/0	t0004	5382	38	25	4	3	4	1	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0005	5384	33	3	2	23	0	5	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0006	5378	12	10	1	0	0	1	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0007	5380	10	0	2	8	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0008	5380	9	0	0	9	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0009	5382	8	1	2	5	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0010	5385	7	0	7	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/1	t0011	5386	7	0	1	3	1	1	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0012	5379	6	0	0	6	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0013	5378	6	0	4	1	1	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0014	5383	5	5	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0015	5389	5	2	3	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0016	5392	5	5	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0017	5393	5	5	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0018	5391	5	0	1	0	0	4	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0019	5387	4	0	2	0	2	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0020	5386	4	4	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0021	5393	4	0	0	3	0	1	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0022	5389	4	0	0	4	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0023	5389	4	4	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0024	5388	4	0	0	4	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0025	5391	3	3	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0026	5380	3	0	1	0	0	2	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0027	5376	3	0	0	3	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0028	5384	3	0	0	0	0	3	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0029	5376	2	2	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0030	5387	2	1	0	0	1	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0031	5382	2	1	1	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0032	5380	2	0	0	0	0	2	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0033	5382	2	0	2	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0034	5384	2	1	1	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0035	5389	2	2	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0036	5393	1	1	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0037	5393	1	1	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0038	5382	1	1	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0039	5380	1	1	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514