JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR10Z1_chr1_158600268_158617514	0/0	t0040	5391	1	0	1	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0041	5391	1	0	1	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0042	5388	1	1	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0043	5380	1	0	1	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0044	5378	1	0	0	1	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0045	5380	1	0	0	1	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0046	5380	1	0	0	1	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0047	5386	1	1	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0048	5380	1	0	0	1	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0049	5382	1	1	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0050	5384	1	1	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0051	5386	1	1	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0052	5382	1	0	0	0	1	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0053	5391	1	0	1	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0054	5380	1	0	0	1	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0055	5383	1	1	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0056	5385	1	1	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0057	5389	1	0	1	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0058	5389	1	0	0	0	0	1	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0059	5385	1	1	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0060	5395	1	0	0	1	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0061	5392	1	0	0	1	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0062	5391	1	0	0	1	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0063	5393	1	0	0	1	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0064	5380	1	0	0	1	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0065	5380	1	0	0	1	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0066	5380	1	0	1	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0067	5386	1	0	1	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0068	5380	1	0	0	0	0	1	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0069	5380	1	0	0	1	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0070	5380	1	0	0	0	0	1	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0071	5376	1	0	0	1	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0072	5382	1	0	1	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0073	5384	1	0	0	1	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	t0074	5389	1	1	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR11A1_chr6_29420504_29462071	0/1	t0001	1664	173	29	39	79	4	21	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0002	1664	160	26	34	76	6	18	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0003	1664	27	5	0	20	0	2	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0004	1664	23	0	0	23	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0005	1664	13	11	1	1	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0006	1664	8	8	0	0	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0007	1664	5	0	0	5	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0008	1664	5	0	0	5	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0009	1664	5	4	1	0	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0010	1664	4	4	0	0	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0011	1664	3	2	1	0	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0012	1664	3	3	0	0	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0013	1664	3	0	0	3	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0014	1664	2	2	0	0	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0015	1664	2	0	0	0	0	2	copy fasta	OR11A1	chr6	29420504	29462071