JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR11A1_chr6_29420504_29462071	0/0	t0016	1664	1	0	0	0	0	1	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0017	1664	1	1	0	0	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0018	1664	1	0	0	1	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0019	1664	1	0	0	1	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	t0020	1664	1	1	0	0	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11G2_chr14_20185896_20206075	0/0	t0001	3479	66	10	7	37	5	7	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0002	3478	53	1	8	33	2	9	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	1/0	t0003	3478	36	6	7	21	0	1	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0004	3479	35	3	10	12	4	6	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0005	3479	29	0	4	25	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0006	3477	24	7	4	7	1	5	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0007	3478	23	0	0	20	0	3	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/1	t0008	3476	19	9	6	1	1	1	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0009	3476	10	9	1	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0010	3480	9	0	7	0	2	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0011	3479	8	0	3	4	0	1	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0012	3478	8	0	0	8	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0013	3478	6	4	0	2	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0014	3478	5	2	0	3	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0015	3479	5	0	3	0	1	1	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0016	3480	5	0	1	4	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0017	3479	5	0	0	5	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0018	3478	4	4	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0019	3480	4	0	2	1	0	1	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0020	3480	4	0	4	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0021	3480	4	1	3	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0022	3479	4	0	0	4	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0023	3477	4	0	0	4	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0024	3477	4	0	0	4	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0025	3479	3	0	0	3	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0026	3476	3	3	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0027	3479	3	0	0	0	0	3	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0028	3478	3	3	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0029	3476	3	2	1	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0030	3478	3	0	0	3	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0031	3478	2	2	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0032	3477	2	2	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0033	3478	2	2	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0034	3477	2	1	1	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0035	3477	2	2	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0036	3480	2	0	1	0	1	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0037	3479	2	0	0	2	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0038	3479	2	2	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0039	3477	2	0	0	1	0	1	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0040	3478	2	0	0	2	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0041	3478	2	1	1	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0042	3477	2	2	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0043	3481	2	0	0	2	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0044	3479	2	0	2	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0045	3476	2	2	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075