JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR11G2_chr14_20185896_20206075	0/0	t0046	3480	2	0	0	1	0	1	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0047	3477	2	0	0	2	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0048	3478	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0049	3481	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0050	3478	1	0	1	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0051	3477	1	0	0	0	0	1	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0052	3477	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0053	3476	1	0	0	0	0	1	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0054	3480	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0055	3481	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0056	3479	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0057	3478	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0058	3477	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0059	3479	1	0	1	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0060	3477	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0061	3478	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0062	3479	1	0	0	0	0	1	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0063	3480	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0064	3480	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0065	3479	1	0	1	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0066	3479	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0067	3479	1	0	1	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0068	3479	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0069	3478	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0070	3478	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0071	3476	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0072	3478	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0073	3478	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0074	3480	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0075	3480	1	0	1	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0076	3478	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0077	3480	1	0	0	0	0	1	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0078	3481	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0079	3479	1	0	0	0	0	1	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0080	3476	1	0	1	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0081	3479	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0082	3478	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0083	3479	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0084	3481	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0085	3479	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0086	3480	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0087	3480	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0088	3480	1	0	0	0	0	1	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0089	3479	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0090	3479	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0091	3479	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0092	3478	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0093	3478	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0094	3477	1	0	0	0	1	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0095	3480	1	0	0	0	0	1	copy fasta	OR11G2	chr14	20185896	20206075