JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR11G2_chr14_20185896_20206075	0/0	t0096	3480	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0097	3479	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0098	3479	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0099	3478	1	0	0	0	0	1	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0100	3478	1	0	0	1	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0101	3478	1	0	1	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0102	3479	1	0	1	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	t0103	3478	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11H4_chr14_20234286_20249349	1/0	t0001	641	270	45	62	121	15	26	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	t0002	641	163	32	17	91	3	20	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	t0003	641	2	1	1	0	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	t0004	641	1	0	0	1	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	t0005	641	1	1	0	0	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	t0006	641	1	0	0	1	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	t0007	641	1	1	0	0	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR12D2_chr6_29390631_29403008	0/0	t0001	573	284	51	55	132	12	34	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/1	t0002	573	122	24	23	58	2	14	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	t0003	573	26	1	1	24	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	t0004	573	13	11	1	1	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	t0005	567	7	7	0	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	t0006	573	2	2	0	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	t0007	573	1	0	0	1	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D3_chr6_29368423_29380291	0/0	t0001	919	147	47	26	60	3	11	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	t0002	919	103	2	26	58	3	14	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	t0003	919	79	22	12	40	2	3	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	t0004	919	47	13	6	25	0	3	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	t0005	919	23	4	3	9	0	7	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/1	t0006	919	11	1	1	4	1	3	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	t0007	919	10	3	3	0	3	1	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	t0008	919	8	0	0	8	0	0	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	t0009	919	2	1	1	0	0	0	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	t0010	919	1	0	0	0	0	1	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	t0011	919	1	1	0	0	0	0	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	t0012	919	1	1	0	0	0	0	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	t0013	919	1	1	0	0	0	0	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	t0014	919	1	0	0	0	0	1	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	t0015	919	1	1	0	0	0	0	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	t0016	919	1	1	0	0	0	0	copy fasta	OR12D3	chr6	29368423	29380291
OR13A1_chr10_45297650_45320608	0/1	t0001	1096	343	43	62	192	11	34	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	t0002	1096	36	33	3	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	t0003	1096	14	0	5	0	5	4	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	t0004	1096	13	13	0	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	t0005	1096	6	5	1	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	t0006	1096	2	0	0	2	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	t0007	1095	2	0	2	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	t0008	1096	1	0	0	1	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	t0009	1096	1	0	0	1	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	t0010	1096	1	1	0	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	t0011	1096	1	0	1	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	t0012	1095	1	1	0	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608