JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR13C3_chr9_104530749_104541856	1/1	t0001	155	456	96	78	226	16	38	copy fasta	OR13C3	chr9	104530749	104541856
OR13G1_chr1_247665812_247684739	0/1	t0001	1645	193	22	41	102	7	20	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	t0002	1645	126	22	13	70	4	17	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	1/0	t0003	1645	57	33	8	14	0	1	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	t0004	1645	15	3	4	0	4	4	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	t0005	1645	9	0	5	0	3	1	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	t0006	1645	9	8	1	0	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	t0007	1645	2	0	0	2	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	t0008	1645	1	0	0	1	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	t0009	1645	1	0	0	1	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	t0010	1645	1	0	0	0	0	1	copy fasta	OR13G1	chr1	247665812	247684739
OR14A16_chr1_247809660_247829119	0/1	t0001	438	290	49	72	122	12	34	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	1/0	t0002	438	28	23	3	0	0	1	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	0/0	t0003	438	23	18	3	0	2	0	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	0/0	t0004	438	1	0	0	0	0	1	copy fasta	OR14A16	chr1	247809660	247829119
OR14A2_chr1_247717957_247753141	1/1	t0001	847	341	82	60	151	14	32	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	t0002	847	4	4	0	0	0	0	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	t0003	847	1	0	0	1	0	0	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	t0004	847	1	0	0	1	0	0	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	t0005	847	1	0	0	1	0	0	copy fasta	OR14A2	chr1	247717957	247753141
OR14J1_chr6_29296701_29318017	0/0	t0001	5479	119	12	16	74	2	15	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0002	5479	81	2	22	42	3	12	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0003	5479	36	2	7	22	2	3	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0004	5479	29	0	0	27	0	2	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0005	5479	23	15	7	1	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0006	5479	22	15	5	0	0	2	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/1	t0007	5479	17	6	1	4	1	4	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0008	5479	16	0	1	15	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0009	5479	12	5	3	0	3	1	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0010	5479	12	12	0	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0011	5479	8	0	0	8	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0012	5479	7	0	4	3	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0013	5479	6	6	0	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0014	5479	6	0	0	6	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0015	5479	5	0	4	0	1	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0016	5479	5	4	1	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0017	5479	3	0	0	3	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0018	5479	3	0	0	3	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0019	5479	3	3	0	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0020	5479	2	1	1	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0021	5479	2	1	1	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0022	5479	2	0	0	2	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0023	5479	2	0	0	2	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0024	5479	2	2	0	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0025	5479	2	0	1	0	1	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0026	5479	2	0	0	0	0	2	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0027	5479	2	0	0	2	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0028	5479	1	0	1	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0029	5479	1	0	0	0	0	1	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0030	5479	1	1	0	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017