JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR14J1_chr6_29296701_29318017	0/0	t0031	5479	1	0	0	1	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0032	5479	1	0	0	0	1	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0033	5479	1	1	0	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0034	5479	1	0	0	1	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0035	5479	1	0	0	1	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0036	5479	1	1	0	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0037	5479	1	1	0	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0038	5479	1	1	0	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0039	5479	1	1	0	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0040	5479	1	0	1	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0041	5479	1	0	0	1	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0042	5479	1	0	0	1	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0043	5479	1	1	0	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0044	5479	1	1	0	0	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	t0045	5479	1	0	0	1	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14L1_chr1_247612143_247627372	0/1	t0001	2032	127	16	32	54	7	17	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	t0002	2032	119	11	20	72	8	8	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	t0003	2032	89	19	24	28	2	16	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	t0004	2032	46	0	3	36	0	7	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	t0005	2032	16	14	2	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	t0006	2032	10	9	1	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	t0007	2032	6	6	0	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	t0008	2032	5	2	2	0	1	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	t0009	2032	4	4	0	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	t0010	2032	3	3	0	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	t0011	2032	2	0	0	2	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	t0012	2032	1	1	0	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	t0013	2032	1	0	0	1	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	t0014	2032	1	1	0	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	t0015	2032	1	1	0	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	t0016	2011	1	1	0	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	1/0	t0017	2032	1	0	0	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	t0018	2032	1	0	0	1	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR1A1_chr17_3202667_3223896	0/0	t0001	3237	118	2	10	95	5	6	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	1/0	t0002	3237	82	9	10	59	0	3	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0003	3237	78	15	18	32	2	11	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/1	t0004	3237	37	8	14	0	4	10	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0005	3238	31	10	11	0	2	8	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0006	3237	11	10	1	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0007	3237	10	0	0	6	0	4	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0008	3237	7	7	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0009	3238	6	5	1	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0010	3237	4	0	2	0	1	1	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0011	3238	3	2	0	0	1	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0012	3237	3	2	1	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0013	3237	3	3	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0014	3237	3	0	2	0	1	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0015	3237	2	0	0	2	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0016	3237	2	0	0	2	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0017	3237	2	0	2	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896