JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR1A1_chr17_3202667_3223896	0/0	t0018	3237	2	2	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0019	3237	2	2	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0020	3237	2	0	0	2	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0021	3237	2	1	1	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0022	3237	2	2	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0023	3237	1	0	0	0	0	1	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0024	3237	1	0	1	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0025	3238	1	1	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0026	3237	1	0	0	1	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0027	3237	1	1	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0028	3237	1	1	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0029	3237	1	0	0	0	0	1	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0030	3238	1	1	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0031	3237	1	1	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0032	3237	1	0	0	1	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0033	3237	1	0	0	0	0	1	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0034	3237	1	1	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0035	3237	1	1	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0036	3226	1	1	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0037	3237	1	1	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0038	3237	1	1	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0039	3237	1	1	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0040	3237	1	0	0	1	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0041	3238	1	0	0	1	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0042	3237	1	0	0	1	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0043	3237	1	0	0	1	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	t0044	3238	1	1	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1B1_chr9_122623125_122662627	0/0	t0001	988	128	24	16	68	7	13	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	t0002	988	94	3	20	53	3	15	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	t0003	988	66	0	10	48	1	7	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	1/0	t0004	988	47	24	9	8	3	2	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	t0005	988	34	11	16	5	1	1	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	t0006	988	18	2	1	8	0	7	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	t0007	988	14	12	2	0	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/1	t0008	988	7	0	3	0	0	3	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	t0009	987	4	4	0	0	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	t0010	988	2	0	0	2	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	t0011	988	1	0	0	1	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	t0012	988	1	0	0	0	1	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	t0013	988	1	0	1	0	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	t0014	988	1	1	0	0	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	t0015	988	1	1	0	0	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	t0016	977	1	0	0	1	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1C1_chr1_247749846_247765556	0/1	t0001	2773	229	5	43	140	13	27	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	t0002	2773	64	1	5	50	0	8	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	t0003	2773	42	14	17	0	3	8	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	t0004	2775	35	17	5	12	0	1	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	t0005	2773	25	16	7	0	2	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	t0006	2773	15	10	4	0	0	1	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	t0007	2772	13	12	1	0	0	0	copy fasta	OR1C1	chr1	247749846	247765556