JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR1C1_chr1_247749846_247765556	0/0	t0008	2775	6	4	2	0	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	t0009	2773	4	4	0	0	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	t0010	2773	3	0	0	3	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	t0011	2773	1	0	0	0	0	1	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	1/0	t0012	2775	1	0	0	0	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	t0013	2773	1	0	0	1	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	t0014	2773	1	0	0	1	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	t0015	2773	1	1	0	0	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	t0016	2773	1	0	0	1	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	t0017	2773	1	1	0	0	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	t0018	2775	1	1	0	0	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1D2_chr17_3083484_3109422	0/1	t0001	3950	217	10	37	138	7	24	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0002	3948	34	18	10	0	1	5	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0003	3952	20	7	4	0	3	6	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0004	3952	17	6	7	4	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0005	3950	17	0	2	12	1	2	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0006	3950	10	10	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0007	3950	9	9	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0008	3950	9	9	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0009	3953	7	6	1	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0010	3952	5	5	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0011	3951	5	5	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0012	3950	5	2	1	0	0	2	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0013	3951	4	0	0	2	0	2	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0014	3953	3	2	1	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0015	3951	3	0	3	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0016	3948	3	0	1	0	1	1	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0017	3950	2	0	0	2	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0018	3950	2	0	1	0	1	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0019	3953	2	1	0	0	0	1	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0020	3948	2	0	2	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0021	3952	1	1	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0022	3952	1	1	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0023	3948	1	0	1	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0024	3950	1	0	0	1	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0025	3950	1	0	0	1	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0026	3952	1	0	0	0	1	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0027	3948	1	0	1	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0028	3950	1	0	0	0	1	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0029	3950	1	0	0	1	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0030	3950	1	0	0	1	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	1/0	t0031	3949	1	0	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0032	3950	1	0	0	0	0	1	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0033	3950	1	1	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0034	3951	1	1	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0035	3953	1	1	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0036	3950	1	1	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0037	3950	1	0	0	1	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	t0038	3950	1	0	0	1	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1E1_chr17_3392104_3403410	1/1	t0001	363	377	83	54	182	14	42	copy fasta	OR1E1	chr17	3392104	3403410