JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR1E1_chr17_3392104_3403410	0/0	t0002	360	3	3	0	0	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1F1_chr16_3183204_3211556	0/0	t0001	1808	98	5	27	42	5	19	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	1/1	t0002	1810	82	26	17	26	5	6	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0003	1810	47	21	4	17	2	3	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0004	1808	20	0	2	17	0	1	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0005	1808	13	11	2	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0006	1810	7	7	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0007	1810	6	0	0	1	0	5	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0008	1810	4	0	1	3	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0009	1811	4	1	1	2	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0010	1811	4	1	0	1	0	2	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0011	1808	3	2	1	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0012	1808	3	0	0	3	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0013	1817	3	3	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0014	1810	2	2	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0015	1810	2	0	0	2	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0016	1810	2	2	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0017	1810	2	2	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0018	1810	2	2	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0019	1810	1	0	0	1	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0020	1811	1	0	0	1	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0021	1811	1	1	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0022	1808	1	1	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0023	1808	1	0	1	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0024	1808	1	0	0	1	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0025	1808	1	1	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0026	1808	1	0	0	0	1	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0027	1808	1	0	0	0	0	1	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0028	1808	1	0	0	0	0	1	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0029	1810	1	1	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0030	1810	1	0	0	1	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0031	1810	1	0	0	1	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0032	1811	1	0	0	1	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0033	1810	1	0	0	0	1	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0034	1808	1	0	0	1	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0035	1810	1	0	1	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0036	1810	1	0	0	1	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0037	1810	1	0	0	1	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0038	1810	1	0	0	1	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0039	1810	1	1	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0040	1808	1	1	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0041	1810	1	0	1	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	t0042	1810	1	1	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1I1_chr19_15077211_15097970	0/0	t0001	4884	10	0	2	7	0	1	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0002	4880	8	0	1	6	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0003	4922	7	0	3	4	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0004	4921	6	2	0	1	3	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0005	4888	5	0	1	3	0	1	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0006	4925	4	0	3	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0007	4930	4	0	1	0	1	2	copy fasta	OR1I1	chr19	15077211	15097970