JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
OR1I1_chr19_15077211_15097970	0/0	t0208	4912	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0209	4923	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0210	4915	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0211	4914	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0212	4911	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0213	4896	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0214	4898	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0215	4914	1	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0216	4897	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0217	4898	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0218	4914	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0219	4911	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0220	4907	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0221	4895	1	0	0	0	1	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0222	4905	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0223	4910	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0224	4909	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0225	4912	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0226	4901	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0227	4907	1	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0228	4889	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0229	4890	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0230	4889	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0231	4893	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0232	4953	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0233	4949	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0234	4946	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0235	4934	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0236	4921	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0237	4950	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0238	4893	1	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0239	4956	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0240	4954	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0241	4955	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0242	4951	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0243	4950	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0244	4948	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0245	4946	1	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0246	4943	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0247	4913	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0248	4914	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0249	4913	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0250	4955	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0251	4921	1	0	0	0	1	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0252	4923	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0253	4922	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0254	4919	1	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0255	4914	1	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0256	4931	1	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0257	4929	1	0	0	1	0	copy fasta	OR1I1	chr19	15077211	15097970