Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASAH1_chr8_18050992_18089107	0/0	t0011	1592	4	0	0	0	0	4	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0012	1592	3	0	0	3	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0013	1592	2	2	0	0	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0014	1592	2	2	0	0	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0015	1592	2	0	0	2	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0016	1592	2	0	0	2	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0017	1592	1	0	0	0	0	1	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0018	1592	1	1	0	0	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0019	1588	1	0	0	1	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0020	1586	1	0	0	0	0	1	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0021	1586	1	0	1	0	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0022	1586	1	1	0	0	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0023	1592	1	1	0	0	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0024	1592	1	1	0	0	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0025	1592	1	1	0	0	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0026	1592	1	1	0	0	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0027	1588	1	0	0	0	0	1	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0028	1588	1	0	0	1	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0029	1588	1	0	0	1	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0030	1592	1	1	0	0	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0031	1592	1	0	0	1	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0032	1592	1	0	0	1	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0033	1588	1	1	0	0	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0034	1592	1	0	0	1	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	t0035	1592	1	0	0	1	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH2B_chr10_50734936_50764255	0/0	t0001	4669	100	6	21	62	3	8	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0002	4661	54	2	4	44	0	4	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0003	4657	41	0	8	24	4	5	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	1/0	t0004	4663	26	15	6	1	0	3	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0005	4655	19	10	1	1	0	7	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0006	4655	18	0	0	18	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/1	t0007	4669	16	2	11	0	1	1	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0008	4659	9	0	0	9	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0009	4665	9	6	2	0	0	1	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0010	4657	7	0	6	0	0	1	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0011	4657	5	0	0	5	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0012	4661	5	0	0	5	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0013	4661	5	0	0	5	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0014	4671	4	1	1	0	2	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0015	4659	4	3	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0016	4661	4	0	0	1	0	3	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0017	4671	3	1	0	2	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0018	4661	3	0	0	0	0	3	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0019	4663	3	1	0	2	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0020	4661	3	3	0	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0021	4670	3	3	0	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0022	4657	2	0	2	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0023	4669	2	0	0	2	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0024	4653	2	2	0	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0025	4659	2	0	1	1	0	0	copy fasta	ASAH2B	chr10	50734936	50764255