JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR1I1_chr19_15077211_15097970	0/0	t0308	4913	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	1/0	t0309	4917	1	0	0	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0310	4930	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0311	4930	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0312	4927	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0313	4925	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0314	4920	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0315	4905	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0316	4922	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0317	4908	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0318	4913	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0319	4930	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0320	4909	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0321	4925	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0322	4918	1	1	0	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0323	4902	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0324	4917	1	1	0	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0325	4953	1	1	0	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0326	4934	1	0	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0327	4935	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0328	4972	1	1	0	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0329	4888	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0330	4892	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0331	4893	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0332	4892	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0333	4884	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0334	4889	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0335	4883	1	0	0	0	0	1	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0336	4910	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0337	4907	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0338	4917	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0339	4905	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0340	4922	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	t0341	4934	1	0	0	1	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1L6_chr9_122737303_122755783	1/1	t0001	85	348	88	68	138	14	38	copy fasta	OR1L6	chr9	122737303	122755783
OR1L8_chr9_122562117_122588384	0/0	t0001	1095	244	13	35	171	6	19	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0002	1095	48	13	24	2	4	5	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/1	t0003	1095	44	7	5	29	0	2	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	1/0	t0004	1095	17	8	5	0	1	2	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0005	1095	16	7	2	3	2	2	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0006	1095	14	13	1	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0007	1095	10	2	1	1	0	6	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0008	1095	7	0	5	0	1	1	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0009	1091	7	7	0	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0010	1095	6	6	0	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0011	1091	5	4	1	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0012	1092	4	4	0	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0013	1095	2	2	0	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0014	1095	2	1	1	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0015	1095	1	1	0	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384