JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR1L8_chr9_122562117_122588384	0/0	t0016	1095	1	1	0	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0017	1092	1	1	0	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0018	1095	1	1	0	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0019	1095	1	1	0	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0020	1095	1	0	1	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0021	1095	1	0	1	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0022	1095	1	1	0	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0023	1095	1	1	0	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	t0024	1095	1	0	0	0	0	1	copy fasta	OR1L8	chr9	122562117	122588384
OR1M1_chr19_9082061_9100669	1/1	t0001	1594	262	58	55	100	11	36	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	t0002	1594	138	6	20	96	4	12	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	t0003	1594	10	10	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	t0004	1582	6	6	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	t0005	1582	5	5	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	t0006	1594	4	4	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	t0007	1594	3	1	1	0	0	1	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	t0008	1594	1	1	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	t0009	1594	1	0	0	0	1	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	t0010	1594	1	0	0	1	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	t0011	1594	1	0	1	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	t0012	1594	1	1	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	t0013	1594	1	0	1	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	t0014	1594	1	0	0	1	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	t0015	1594	1	0	0	0	0	1	copy fasta	OR1M1	chr19	9082061	9100669
OR1N2_chr9_122548112_122559214	0/0	t0001	153	170	34	29	85	7	15	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	1/0	t0002	153	99	33	34	9	8	14	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	t0003	153	85	2	2	77	1	3	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/1	t0004	153	58	13	14	23	0	7	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	t0005	153	19	11	1	6	0	1	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	t0006	153	4	4	0	0	0	0	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	t0007	153	1	1	0	0	0	0	copy fasta	OR1N2	chr9	122548112	122559214
OR1S1_chr11_58207720_58221084	0/1	t0001	536	317	36	62	174	11	33	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	1/0	t0002	536	125	48	20	41	4	11	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	t0003	536	7	6	1	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	t0004	536	4	3	1	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	t0005	536	2	0	0	2	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	t0006	536	1	0	0	1	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	t0007	536	1	0	1	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	t0008	536	1	1	0	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	t0009	536	1	0	1	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	t0010	536	1	0	0	0	1	0	copy fasta	OR1S1	chr11	58207720	58221084
OR2A12_chr7_144081278_144103953	1/0	t0001	3231	250	46	43	112	9	39	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/1	t0002	3231	68	3	5	57	1	1	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0003	3234	26	19	4	0	3	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0004	3231	7	3	4	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0005	3231	4	4	0	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0006	3231	4	0	0	4	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0007	3234	4	4	0	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0008	3234	3	3	0	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0009	3231	2	0	2	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953