JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2A12_chr7_144081278_144103953	0/0	t0010	3231	2	0	1	0	1	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0011	3231	2	0	2	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0012	3234	2	2	0	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0013	3231	2	0	0	0	2	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0014	3231	1	0	0	1	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0015	3231	1	0	0	1	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0016	3231	1	0	0	0	0	1	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0017	3231	1	1	0	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0018	3231	1	1	0	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0019	3231	1	0	0	1	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0020	3231	1	0	0	1	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0021	3231	1	0	0	0	0	1	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0022	3231	1	0	1	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0023	3231	1	1	0	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0024	3234	1	1	0	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0025	3234	1	1	0	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0026	3231	1	0	0	1	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	t0027	3231	1	1	0	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A14_chr7_144118176_144136188	0/1	t0001	1266	237	34	33	148	3	18	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	1/0	t0002	1267	121	17	18	53	7	25	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0003	1266	13	13	0	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0004	1266	13	6	4	0	3	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0005	1266	10	9	1	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0006	1267	5	5	0	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0007	1266	4	0	1	0	1	2	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0008	1261	3	2	1	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0009	1266	3	0	1	1	0	1	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0010	1266	3	3	0	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0011	1267	2	0	1	0	1	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0012	1267	2	0	0	2	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0013	1266	1	1	0	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0014	1266	1	0	0	0	1	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0015	1266	1	0	0	1	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0016	1266	1	0	0	1	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0017	1266	1	0	1	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0018	1266	1	1	0	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0019	1266	1	1	0	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0020	1266	1	1	0	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0021	1267	1	0	1	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	t0022	1266	1	1	0	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A1_chr7_144307419_144327737	0/0	t0001	3810	14	0	4	9	0	1	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	1/0	t0002	3814	5	0	1	2	0	1	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0003	3803	5	0	0	5	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0004	3807	4	0	2	2	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0005	3803	3	0	0	3	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0006	3811	3	0	0	2	0	1	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0007	3810	3	2	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0008	3814	2	1	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0009	3803	2	0	0	0	1	1	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0010	3814	2	0	0	0	0	2	copy fasta	OR2A1	chr7	144307419	144327737