JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2A1_chr7_144307419_144327737	0/0	t0011	3814	2	0	1	0	1	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0012	3818	2	0	1	0	0	1	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0013	3809	2	0	2	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0014	3813	2	0	1	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0015	3817	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0016	3817	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0017	3805	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0018	3803	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0019	3811	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0020	3813	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0021	3813	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0022	3803	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0023	3811	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0024	3811	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0025	3803	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0026	3803	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0027	3813	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0028	3813	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0029	3803	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0030	3812	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0031	3810	1	0	0	0	0	1	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0032	3803	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0033	3807	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0034	3807	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0035	3805	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0036	3807	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0037	3805	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0038	3805	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0039	3809	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0040	3809	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0041	3809	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0042	3811	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0043	3811	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0044	3811	1	0	0	0	1	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0045	3811	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0046	3811	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0047	3811	1	0	0	0	0	1	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0048	3811	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0049	3811	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0050	3803	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0051	3807	1	0	0	0	0	1	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0052	3807	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0053	3811	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0054	3809	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0055	3813	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0056	3813	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0057	3813	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0058	3813	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0059	3813	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0060	3803	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737