JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2A1_chr7_144307419_144327737	0/0	t0061	3807	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0062	3811	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0063	3811	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0064	3809	1	0	0	0	1	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0065	3811	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0066	3808	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0067	3810	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0068	3807	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0069	3810	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0070	3810	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0071	3810	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0072	3810	1	0	0	0	0	1	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0073	3810	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0074	3814	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0075	3812	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0076	3814	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0077	3812	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0078	3810	1	0	0	0	0	1	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0079	3815	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	t0080	3805	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A25_chr7_144064811_144080870	1/0	t0001	809	254	31	48	139	8	27	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/1	t0002	810	77	10	7	51	5	3	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	t0003	810	41	35	6	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	t0004	810	25	1	8	2	2	12	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	t0005	810	11	11	0	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	t0006	810	3	0	2	0	1	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	t0007	809	1	1	0	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	t0008	809	1	1	0	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	t0009	810	1	1	0	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	t0010	810	1	0	1	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	t0011	809	1	1	0	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	t0012	809	1	1	0	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	t0013	809	1	1	0	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A42_chr7_144223244_144244605	0/0	t0001	4011	16	0	4	11	0	1	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0002	4014	11	3	2	1	1	4	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0003	4014	8	0	0	8	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0004	4016	5	0	0	5	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0005	4014	5	0	4	0	1	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0006	4011	3	0	1	0	1	1	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/1	t0007	4010	3	0	0	1	0	1	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0008	4014	3	0	0	3	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0009	4017	2	1	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0010	4017	2	2	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0011	4011	2	0	0	2	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0012	4010	2	0	1	0	1	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0013	4014	2	0	2	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0014	4012	2	2	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0015	4018	2	2	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0016	4014	2	1	0	0	0	1	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	1/0	t0017	4014	2	0	0	0	0	1	copy fasta	OR2A42	chr7	144223244	144244605